Understanding Molecular Simulation: From Algorithms to Applications

Author:   Daan Frenkel (FOM Institute for Atomic and Molecular Physics, The Netherlands) ,  Berend Smit (Professor at the Department of Chemical Engineering of the Faculty of Science, University of Amsterdam)
Publisher:   Elsevier Science & Technology
Edition:   3rd edition
ISBN:  

9780323902922


Pages:   679
Publication Date:   18 July 2023
Format:   Paperback
Availability:   Manufactured on demand   Availability explained
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Understanding Molecular Simulation: From Algorithms to Applications


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Overview

Understanding Molecular Simulation explains molecular simulation from a chemical-physics and statistical-mechanics perspective. It highlights how physical concepts are used to develop better algorithms and expand the range of applicability of simulations. Understanding Molecular Simulation is equally relevant for those who develop new code and those who use existing packages. Both groups are continuously confronted with the question of which computational technique best suits a given application. Understanding Molecular Simulation provides readers with the foundational knowledge they need to learn about, select and apply the most appropriate of these tools to their own work. The implementation of simulation methods is illustrated in pseudocodes, and their practical use is shown via case studies presented throughout the text. Since the second edition’s publication, the simulation world has expanded significantly: existing techniques have continued to develop, and new ones have emerged, opening up novel application areas. This new edition aims to describe these new developments without becoming exhaustive; examples are included that highlight current uses, and several new examples have been added to illustrate recent applications. Examples, case studies, questions, and downloadable algorithms are also included to support learning. No prior knowledge of computer simulation is assumed.

Full Product Details

Author:   Daan Frenkel (FOM Institute for Atomic and Molecular Physics, The Netherlands) ,  Berend Smit (Professor at the Department of Chemical Engineering of the Faculty of Science, University of Amsterdam)
Publisher:   Elsevier Science & Technology
Imprint:   Academic Press Inc
Edition:   3rd edition
Weight:   1.180kg
ISBN:  

9780323902922


ISBN 10:   0323902928
Pages:   679
Publication Date:   18 July 2023
Audience:   College/higher education ,  Tertiary & Higher Education
Format:   Paperback
Publisher's Status:   Active
Availability:   Manufactured on demand   Availability explained
We will order this item for you from a manufactured on demand supplier.

Table of Contents

"1. Introduction Part I: Basics 2. Thermodynamics and Statistical Mechanics 3. Monte Carlo Simulations 4. Molecular Dynamics Simulations 5. Computer Experiments Part II: Ensembles 6. Monte Carlo Simulations in Various Ensembles 7. Molecular Dynamics in Various Ensembles Part III: Free -Energy Calculations 8. Free Energy Calculations 9. Free Energies of Solids 10. Free Energy of Chain Molecules Part IV: Advanced Techniques 11. Long-Ranged Interactions 12. Configurational Bias Monte Carlo 13. Accelerating Monte Carlo Sampling 14. Time-Scale-separation Problems in MD 15. Rare Events 16. Mesoscopic Fluid Models Part V: Appendices A: Lagrangian and Hamiltonian B: Non-Hamiltonian Dynamics C: Non-equilibrium Thermodynamics D: Smoothed Dissipative Particle Dynamics E: Committor for 1-D diffusive barrier crossing F: Linear Response Theory: examples G: Statistical Errors H: Integration Schemes I: Saving CPU Time J: Reference States K: Statistical Mechanics of the Gibbs ""Ensemble"" L: Overlapping Distribution for Polymers M: Some General Purpose Algorithms"

Reviews

From the previous edition: ... this book brilliantly lays down the scientific foundations of the simulational approach ... --Prof. Kurt Binder in Physics World, 1997 ... a treasure. The book is a marvellous mix of just enough formalism with an informal and readable style, sufficient detail to understand methodological advances, appropriate mathematics ... --Prof. Mark A. Ratner in Physics Today, 1997


"From the previous edition: ""... this book brilliantly lays down the scientific foundations of the simulational approach ..."" --Prof. Kurt Binder in Physics World, 1997 ""... a treasure. The book is a marvellous mix of just enough formalism with an informal and readable style, sufficient detail to understand methodological advances, appropriate mathematics ..."" --Prof. Mark A. Ratner in Physics Today, 1997"


From the previous edition: ... this book brilliantly lays down the scientific foundations of the simulational approach ... --Prof. Kurt Binder in Physics World, 1997 ... a treasure. The book is a marvellous mix of just enough formalism with an informal and readable style, sufficient detail to understand methodological advances, appropriate mathematics ... --Prof. Mark A. Ratner in Physics Today, 1997


Author Information

Daan Frenkel is based at the FOM Institute for Atomic and Molecular Physics and at the Department of Chemistry, University of Amsterdam. His research has three central themes: prediction of phase behavior of complex liquids, modeling the (hydro) dynamics of colloids and microporous structures, and predicting the rate of activated processes. He was awarded the prestigious Spinoza Prize from the Dutch Research Council in 2000. Berend Smit is Professor at the Department of Chemical Engineering of the Faculty of Science, University of Amsterdam. His research focuses on novel Monte Carlo simulations. Smit applies this technique to problems that are of technological importance, particularly those of interest in chemical engineering.

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