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Author:   Francesca D. Ciccarelli ,  István Miklós
Publisher:   Springer-Verlag Berlin and Heidelberg GmbH & Co. KG
Imprint:   Springer-Verlag Berlin and Heidelberg GmbH & Co. K
Edition:   2009 ed.
Volume:   5817
Dimensions:   Width: 15.50cm , Height: 1.50cm , Length: 23.50cm
Weight:   0.391kg
ISBN:  

9783642047435

ISBN 10:   3642047432
Pages:   241
Publication Date:   29 September 2009
Audience:   Professional and scholarly ,  Professional & Vocational
Format:   Paperback
Publisher's Status:   Active
Availability:   In Print  
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Table of Contents

Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods.- Natural Parameter Values for Generalized Gene Adjacency.- Parking Functions, Labeled Trees and DCJ Sorting Scenarios.- Counting All DCJ Sorting Scenarios.- Minimal Conflicting Sets for the Consecutive Ones Property in Ancestral Genome Reconstruction.- Finding Nested Common Intervals Efficiently.- DCJ Median Problems on Linear Multichromosomal Genomes: Graph Representation and Fast Exact Solutions.- Rearrangement Models and Single-Cut Operations.- Aligning Two Genomic Sequences That Contain Duplications.- Inferring the Recent Duplication History of a Gene Cluster.- Pseudo Boolean Programming for Partially Ordered Genomes.- Computing the Summed Adjacency Disruption Number between Two Genomes with Duplicate Genes Using Pseudo-Boolean Optimization.- Reconstructing Histories of Complex Gene Clusters on a Phylogeny.- Co-evolutionary Models for Reconstructing Ancestral Genomic Sequences: Computational Issues and Biological Examples.- Whole-Genome Analysis of Gene Conversion Events.- A Statistically Fair Comparison of Ancestral Genome Reconstructions, Based on Breakpoint and Rearrangement Distances.- Comparative Genomics and Extensive Recombinations in Phage Communities.- Properties of Sequence Conservation in Upstream Regulatory and Protein Coding Sequences among Paralogs in Arabidopsis thaliana.- Transcription Factor Binding Probabilities in Orthologous Promoters: An Alignment-Free Approach to the Inference of Functional Regulatory Targets.

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