Structural Bioinformatics Tools for Drug Design: Extraction of Biologically Relevant Information from Structural Databases

Author:   Jaroslav Koča ,  Radka Svobodová Vařeková ,  Lukáš Pravda ,  Karel Berka
Publisher:   Springer International Publishing AG
Edition:   1st ed. 2016
ISBN:  

9783319473871


Pages:   144
Publication Date:   01 February 2017
Format:   Paperback
Availability:   Manufactured on demand   Availability explained
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Structural Bioinformatics Tools for Drug Design: Extraction of Biologically Relevant Information from Structural Databases


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Overview

The book describes the individual steps necessary for biomacromolecular fragments analysis, as well as a list of essential software tools. For each step, it also shows corresponding web-based tools in detail and provides practical examples of their use. All tools and databases mentioned in the examples are available free of charge, platform-independent, web-based, user-friendly and do not require a prior IT background to be fully used.

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Author:   Jaroslav Koča ,  Radka Svobodová Vařeková ,  Lukáš Pravda ,  Karel Berka
Publisher:   Springer International Publishing AG
Imprint:   Springer International Publishing AG
Edition:   1st ed. 2016
Dimensions:   Width: 15.50cm , Height: 0.90cm , Length: 23.50cm
Weight:   2.526kg
ISBN:  

9783319473871


ISBN 10:   3319473875
Pages:   144
Publication Date:   01 February 2017
Audience:   Professional and scholarly ,  Professional & Vocational
Format:   Paperback
Publisher's Status:   Active
Availability:   Manufactured on demand   Availability explained
We will order this item for you from a manufactured on demand supplier.

Table of Contents

1. Introduction.- 2. Biomacromolecular fragments .- 3. Databases.- 4. Detection & Extraction.- a. Biomacromolecular fragments and structural patterns.- b. channels and pores.- 5. Validation.- 6. Characterization.- a. Partial atomic charges.- b. Channel characteristics.- 7. Selected Examples.

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Author Information

Prof. RNDr. Jaroslav Koca, DrSc., is director of the Central European Institute of Technology and Head of the research group Computational Chemistry at Masaryk University in Brno, Czech Republic. His field of expertise is mathematical and computer assisted chemistry and biochemistry, computer assisted molecular modeling of biologically interesting chemical species, information technology in chemistry, biochemistry, and environmental chemistry. Last years´ projects were mainly on conformational search, molecular docking and molecular dynamics simulations on peptides, proteins, oligonucleotides, nucleotide sugars, and carbohydrates. Methods for analysis conformational potential energy surfaces and energy landscapes of chemical reactions using molecular mechanics and quantum chemistry techniques. For more information see: http://www.chemi.muni.cz/~jkoca/

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